Reprogramming Recovery

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Benchmarking methods for transcription factor prioritization.

View the Project on GitHub gifford-lab/ReprogrammingRecovery

Mouse Transcription Factor List

To evaluate RNA-seq based methods, we developed a list of 1,374 mouse transcription factors based on the curated list of human transcription factors from Lambert et. al, 2018, where a list of 2,765 proteins were manually curated to those which are likely to have DNA-binding domains and exhibit sequence-specific binding.